weka.gui.graphvisualizer

## Class GraphVisualizer

- java.lang.Object
- - java.awt.Component
  - - java.awt.Container
    - - javax.swing.JComponent
      - - javax.swing.JPanel
        - - weka.gui.graphvisualizer.GraphVisualizer

- All Implemented Interfaces:
    java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible, GraphConstants, LayoutCompleteEventListener

      public class GraphVisualizer
      extends javax.swing.JPanel
      implements GraphConstants, LayoutCompleteEventListener

  This class displays the graph we want to visualize. It should be sufficient to use only this class in weka.gui.graphvisulizer package to visualize a graph. The description of a graph should be provided as a string argument using readBIF or readDOT method in either XMLBIF03 or DOT format. Alternatively, an InputStream in XMLBIF03 can also be provided to another variation of readBIF. It would be necessary in case input is in DOT format to call the layoutGraph() method to display the graph correctly after the call to readDOT. It is also necessary to do so if readBIF is called and the graph description doesn't have x y positions for nodes.

  The graph's data is held in two FastVectors, nodes are stored as objects of GraphNode class and edges as objects of GraphEdge class.

  The graph is displayed by positioning and drawing each node according to its x y position and then drawing all the edges coming out of it give by its edges[][] array, the arrow heads are ofcourse marked in the opposite(ie original direction) or both directions if the edge is reversed or is in both directions. The graph is centered if it is smaller than it's display area. The edges are drawn from the bottom of the current node to the top of the node given by edges[][] array in GraphNode class, to avoid edges crossing over other nodes. This might need to be changed if another layout engine is added or the current Hierarchical engine is updated to avoid such crossings over nodes.

  Version:
    $Revision: 14497 $
  Author:
    Ashraf M. Kibriya (amk14@cs.waikato.ac.nz)
  See Also:
    Serialized Form

- - ### Nested Class Summary

    - ### Nested classes/interfaces inherited from class javax.swing.JComponent

      `javax.swing.JComponent.AccessibleJComponent`

    - ### Nested classes/interfaces inherited from class java.awt.Component

      `java.awt.Component.BaselineResizeBehavior`

  - ### Field Summary

    - ### Fields inherited from class javax.swing.JComponent

      `TOOL_TIP_TEXT_KEY, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW`

    - ### Fields inherited from class java.awt.Component

      `BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT`

    - ### Fields inherited from interface weka.gui.graphvisualizer.GraphConstants

      `DIRECTED, DOUBLE, NORMAL, PLURAL_DUMMY, REVERSED, SINGULAR_DUMMY`

    - ### Fields inherited from interface java.awt.image.ImageObserver

      `ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH`

  - ### Constructor Summary

    Constructors
    Constructor and Description
    `GraphVisualizer()` Constructor Sets up the gui and initializes all the other previously uninitialized variables.

  - ### Method Summary

    All Methods Static Methods Instance Methods Concrete Methods
    Modifier and Type | Method and Description
    --- | ---
    `void` | `layoutCompleted(LayoutCompleteEvent le)` This method is an implementation for LayoutCompleteEventListener class.
    `void` | `layoutGraph()` This method lays out the graph by calling the LayoutEngine's layoutGraph() method.
    `static void` | `main(java.lang.String[] args)` Main method to load a text file with the description of a graph from the command line
    `void` | `readBIF(java.io.InputStream instream)` BIF reader Reads a graph description in XMLBIF03 from an InputStrem
    `void` | `readBIF(java.lang.String instring)` BIF reader Reads a graph description in XMLBIF03 from a string
    `void` | `readDOT(java.io.Reader input)` Dot reader Reads a graph description in DOT format from a string

    - ### Methods inherited from class javax.swing.JPanel

      `getAccessibleContext, getUI, getUIClassID, setUI, updateUI`

    - ### Methods inherited from class javax.swing.JComponent

      `addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintImmediately, paintImmediately, print, printAll, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update`

    - ### Methods inherited from class java.awt.Container

      `add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate`

    - ### Methods inherited from class java.awt.Component

      `action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, contains, createImage, createImage, createVolatileImage, createVolatileImage, dispatchEvent, enable, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle`

    - ### Methods inherited from class java.lang.Object

      `equals, getClass, hashCode, notify, notifyAll, wait, wait, wait`

- - ### Constructor Detail

    - #### GraphVisualizer

          public GraphVisualizer()

      Constructor
      Sets up the gui and initializes all the other previously uninitialized variables.

  - ### Method Detail

    - #### layoutCompleted

          public void layoutCompleted(LayoutCompleteEvent le)

      This method is an implementation for LayoutCompleteEventListener class. It sets the size appropriate for m_gp GraphPanel and and revalidates it's container JScrollPane once a LayoutCompleteEvent is received from the LayoutEngine.
      Specified by:
        `layoutCompleted` in interface `LayoutCompleteEventListener`

    - #### layoutGraph

          public void layoutGraph()

      This method lays out the graph by calling the LayoutEngine's layoutGraph() method. This method should be called to display the graph nicely, unless the input XMLBIF03 already contains some layout information (ie the x,y positions of nodes.

    - #### readBIF

          public void readBIF(java.lang.String instring)
                       throws BIFFormatException

      BIF reader
      Reads a graph description in XMLBIF03 from a string
      Throws:
        `BIFFormatException`

    - #### readBIF

          public void readBIF(java.io.InputStream instream)
                       throws BIFFormatException

      BIF reader
      Reads a graph description in XMLBIF03 from an InputStrem
      Throws:
        `BIFFormatException`

    - #### readDOT

          public void readDOT(java.io.Reader input)

      Dot reader
      Reads a graph description in DOT format from a string

    - #### main

          public static void main(java.lang.String[] args)

      Main method to load a text file with the description of a graph from the command line